Hdf5 Compression Investigation¶
One of the benefits of the yaml interface is the possibility for generating the yaml automatically. This was particularly useful when evaluating the compression algorithms that come with HDf5 and HDF5-rust. In this example we generate an exhaustive combination of compression options and visualize how they affect the processing time and the hdf5 compression.
Given that there are so many combinations, it was practical to use a very small file for this investigation. The input tpx3 file was 1.1Mb. Below you can see the impact of each of the variables on the file size and processing performance.
Note
The below data is representative of a very small raw data size (1.1Mb) due to the practicalities of so many luna runs. You may base your decision on which algorithm and parameters to use on this data, but keep in mind that at this time we do not know if the performance scales as we expect.
In short, it might be a good idea to use this script and find out for yourself which compression sets are right for your data.
Python Script¶
- noindex:
1import os
2from io import StringIO
3
4from ruamel.yaml import YAML
5from ruamel.yaml.comments import CommentedMap
6import pandas as pd
7import seaborn as sns
8import matplotlib.pyplot as plt
9import sys
10
11import warnings
12warnings.filterwarnings("ignore", category=FutureWarning)
13
14sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__), '..')))
15from env_vars_for_docs_examples import COMPRESSION_DATA_FNAME, PYTHON_EXAMPLE_OUTPUT_DIR, PLOTS_DIRECTORY
16
17
18def generate_compression_analysis_yaml():
19 algo = [
20 None,
21 "BloscLz4hc",
22 "BloscBlosclz",
23 "BloscSnappy",
24 "BloscZlib",
25 "BloscLz4",
26 "Deflate",
27 "BloscZstd"
28 ]
29 shuffle = [None, "Bit", "Byte"]
30 level = [None, 1, 5, 9]
31 nthreads = [1, 12, 24]
32 chunk_size = [2 ** 10, 2 ** 12, 2 ** 14, 2 ** 15]
33
34 # 1MB
35 raw_data_path = "$(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001.tpx3"
36 layout = "Tpx3Single"
37
38 base_yaml = {
39 'timepixSchemaVersion': '1.0.0',
40 'datasets': [
41 {
42 "id": "BaseYaml",
43 'layout': layout,
44 'detectorType': 'Tpx3',
45 'description': 'None',
46 'application': 'VMI',
47 'data': [
48 {'path': raw_data_path}
49 ],
50 'analysis': []
51 }
52 ]
53 }
54
55 analysis_template = {
56 'epsSpace': 1,
57 'epsTime': "150ns",
58 'timeBinInterval': "1s",
59 'numTimeBins': 5,
60 'rawOnly': False,
61 'logLevel': "info"
62 }
63
64 for a in algo:
65 for s in shuffle:
66 for n in nthreads:
67 for l in level:
68 for c in chunk_size:
69 analysis_id = f"Algorithm_{a}_Shuffle_{s}_nThreads_{n}_CompressionLevel_{l}_Hdf5ChunkSize_{c}"
70 output_file = f"{raw_data_path.replace('.tpx3', '')}_{analysis_id}.h5"
71 analysis_entry = {
72 'id': analysis_id,
73 'outputFile': output_file,
74 'compressionAlgorithm': a,
75 'compressionShuffle': s,
76 'compressionNthreads': n,
77 'compressionLevel': l,
78 "hdf5ChunkSize": c,
79 }
80 analysis_entry.update(analysis_template)
81 base_yaml['datasets'][0]['analysis'].append(analysis_entry)
82 yaml = YAML()
83 yaml.default_flow_style = False
84 stream = StringIO()
85 yaml.dump(base_yaml, stream)
86 yaml_string = stream.getvalue()
87 return yaml_string
88
89
90def convert_to_seconds(time_str):
91 if 'ms' in time_str:
92 return float(time_str.replace('ms', '')) / 1000
93 elif 's' in time_str:
94 return float(time_str.replace('s', ''))
95 else:
96 return float(time_str)
97
98
99def plot():
100 df = pd.read_csv(COMPRESSION_DATA_FNAME)
101 df['graph_execution_time'] = df['graph_execution_time'].apply(convert_to_seconds)
102 for hue in ["compression_algorithm", "compression_nthreads", "compression_shuffle", "compression_level",
103 "hdf5_chunk_size"]:
104 # Plot for compression algorithm
105 fig, axes = plt.subplots(1, 2, figsize=(16, 6))
106 sns.barplot(
107 x='compression_algorithm', y='graph_execution_time',
108 hue=hue, data=df, ax=axes[0],
109 edgecolor="black", linewidth=1
110 )
111 axes[0].set_xlabel('Compression Algorithm')
112 axes[0].set_ylabel('Processing Time (seconds)')
113 axes[0].tick_params(axis='x', rotation=45)
114
115 sns.barplot(
116 x='compression_algorithm', y='filesize_in_megabytes',
117 hue=hue, data=df, ax=axes[1],
118 edgecolor="black", linewidth=1
119 )
120 axes[1].set_xlabel('Compression Algorithm')
121 axes[1].set_ylabel('File Size (MB)')
122 axes[1].tick_params(axis='x', rotation=45)
123 sns.despine(fig)
124
125 plt.suptitle("Evaluation of compression on performance. \n(Input .tpx3 file 1MB)")
126
127 fig_fname = os.path.join(PLOTS_DIRECTORY, f"evaluation_compression_algorithms_{hue}.png")
128 fig.savefig(fig_fname, bbox_inches="tight", dpi=250)
129 print(f"Figure saved to \"{fig_fname}\"")
130
131
132if __name__ == "__main__":
133 yaml_string = generate_compression_analysis_yaml()
134 print(yaml_string)
135 plot()
Compression Plots¶
Script Output¶
timepixSchemaVersion: 1.0.0
datasets:
- id: BaseYaml
layout: Tpx3Single
detectorType: Tpx3
description: None
application: VMI
data:
- path: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001.tpx3
analysis:
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_None_Hdf5ChunkSize_1024
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_None_Hdf5ChunkSize_1024.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel:
hdf5ChunkSize: 1024
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_None_Hdf5ChunkSize_4096
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_None_Hdf5ChunkSize_4096.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel:
hdf5ChunkSize: 4096
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_None_Hdf5ChunkSize_16384
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_None_Hdf5ChunkSize_16384.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel:
hdf5ChunkSize: 16384
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_None_Hdf5ChunkSize_32768
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_None_Hdf5ChunkSize_32768.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel:
hdf5ChunkSize: 32768
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_1_Hdf5ChunkSize_1024
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_1_Hdf5ChunkSize_1024.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel: 1
hdf5ChunkSize: 1024
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_1_Hdf5ChunkSize_4096
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_1_Hdf5ChunkSize_4096.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel: 1
hdf5ChunkSize: 4096
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_1_Hdf5ChunkSize_16384
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_1_Hdf5ChunkSize_16384.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel: 1
hdf5ChunkSize: 16384
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_1_Hdf5ChunkSize_32768
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_1_Hdf5ChunkSize_32768.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel: 1
hdf5ChunkSize: 32768
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_5_Hdf5ChunkSize_1024
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_5_Hdf5ChunkSize_1024.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel: 5
hdf5ChunkSize: 1024
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_5_Hdf5ChunkSize_4096
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_5_Hdf5ChunkSize_4096.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel: 5
hdf5ChunkSize: 4096
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_5_Hdf5ChunkSize_16384
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_5_Hdf5ChunkSize_16384.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel: 5
hdf5ChunkSize: 16384
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_5_Hdf5ChunkSize_32768
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_5_Hdf5ChunkSize_32768.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel: 5
hdf5ChunkSize: 32768
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_9_Hdf5ChunkSize_1024
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_9_Hdf5ChunkSize_1024.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel: 9
hdf5ChunkSize: 1024
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_9_Hdf5ChunkSize_4096
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_9_Hdf5ChunkSize_4096.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel: 9
hdf5ChunkSize: 4096
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_9_Hdf5ChunkSize_16384
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_9_Hdf5ChunkSize_16384.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel: 9
hdf5ChunkSize: 16384
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_9_Hdf5ChunkSize_32768
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_1_CompressionLevel_9_Hdf5ChunkSize_32768.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 1
compressionLevel: 9
hdf5ChunkSize: 32768
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_None_Hdf5ChunkSize_1024
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_None_Hdf5ChunkSize_1024.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel:
hdf5ChunkSize: 1024
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_None_Hdf5ChunkSize_4096
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_None_Hdf5ChunkSize_4096.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel:
hdf5ChunkSize: 4096
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_None_Hdf5ChunkSize_16384
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_None_Hdf5ChunkSize_16384.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel:
hdf5ChunkSize: 16384
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_None_Hdf5ChunkSize_32768
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_None_Hdf5ChunkSize_32768.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel:
hdf5ChunkSize: 32768
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_1_Hdf5ChunkSize_1024
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_1_Hdf5ChunkSize_1024.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel: 1
hdf5ChunkSize: 1024
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_1_Hdf5ChunkSize_4096
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_1_Hdf5ChunkSize_4096.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel: 1
hdf5ChunkSize: 4096
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_1_Hdf5ChunkSize_16384
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_1_Hdf5ChunkSize_16384.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel: 1
hdf5ChunkSize: 16384
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_1_Hdf5ChunkSize_32768
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_1_Hdf5ChunkSize_32768.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel: 1
hdf5ChunkSize: 32768
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_5_Hdf5ChunkSize_1024
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_5_Hdf5ChunkSize_1024.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel: 5
hdf5ChunkSize: 1024
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_5_Hdf5ChunkSize_4096
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_5_Hdf5ChunkSize_4096.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel: 5
hdf5ChunkSize: 4096
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_5_Hdf5ChunkSize_16384
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_5_Hdf5ChunkSize_16384.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel: 5
hdf5ChunkSize: 16384
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_5_Hdf5ChunkSize_32768
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_5_Hdf5ChunkSize_32768.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel: 5
hdf5ChunkSize: 32768
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_9_Hdf5ChunkSize_1024
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_9_Hdf5ChunkSize_1024.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel: 9
hdf5ChunkSize: 1024
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_9_Hdf5ChunkSize_4096
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_9_Hdf5ChunkSize_4096.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel: 9
hdf5ChunkSize: 4096
epsSpace: 1
epsTime: 150ns
timeBinInterval: 1s
numTimeBins: 5
rawOnly: false
logLevel: info
- id: Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_9_Hdf5ChunkSize_16384
outputFile: $(ASI_TEST_SUITE)/Tpx3/02_Intensified_TPX3CAM/01_with_gamma_scintillator/space_test/int_contmun5min_withCshutterclose000001_Algorithm_None_Shuffle_None_nThreads_12_CompressionLevel_9_Hdf5ChunkSize_16384.h5
compressionAlgorithm:
compressionShuffle:
compressionNthreads: 12
compressionLevel: 9
hdf5ChunkSize: 16384
epsSpace: 1
epsTime: 150ns
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Figure saved to "/Users/Ciaran/atlassian-bitbucket-pipelines-runner/temp/e71169e4-520a-5b30-a5ab-ee8a44eb5fac/build/docs/source/_static/examples_output/plots/evaluation_compression_algorithms_compression_algorithm.png"
Figure saved to "/Users/Ciaran/atlassian-bitbucket-pipelines-runner/temp/e71169e4-520a-5b30-a5ab-ee8a44eb5fac/build/docs/source/_static/examples_output/plots/evaluation_compression_algorithms_compression_nthreads.png"
Figure saved to "/Users/Ciaran/atlassian-bitbucket-pipelines-runner/temp/e71169e4-520a-5b30-a5ab-ee8a44eb5fac/build/docs/source/_static/examples_output/plots/evaluation_compression_algorithms_compression_shuffle.png"
Figure saved to "/Users/Ciaran/atlassian-bitbucket-pipelines-runner/temp/e71169e4-520a-5b30-a5ab-ee8a44eb5fac/build/docs/source/_static/examples_output/plots/evaluation_compression_algorithms_compression_level.png"
Figure saved to "/Users/Ciaran/atlassian-bitbucket-pipelines-runner/temp/e71169e4-520a-5b30-a5ab-ee8a44eb5fac/build/docs/source/_static/examples_output/plots/evaluation_compression_algorithms_hdf5_chunk_size.png"